Biological Pathway Modeling

When one of our clients really wants to understand how a particular biological pathway works, we can build it for them …

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NASA Transiting Exoplanet Survey Satellite

Amber Biology is very excited to have been hired as a contractor for NASA’s TESS (Transiting Exoplanet Survey Satellite) mission. Due to be launched from Cape Canaveral as early as March 2018, the TESS spacecraft will search for exoplanets orbiting distant stars…

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PyPop: Python For Population Genomics

Amber Biology has been engaged to perform a full-scale overhaul of Python for Population Genomics (PyPop). PyPop is an open-source framework for large-scale population genomics. implemented to probe genotype data for signatures of natural selection.…

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Blood Diagnostic Robot Software

Amber Biology was hired to create sophisticated, custom machine control and user interface software for a medical diagnostic robot being developed by a team at Harvard Medical School

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Data Mining To Optimize A Biological Manufacturing Process

Algorithms were implemented in Python to correlate biomolecule manufacturing outcomes with process parameters, in order to improve the consistency and predictability of the manufacturing process…

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Modeling A Drug's Mechanism of Action

A collaborative, cloud-based software platform being developed for modeling complex cell signaling pathways. This platform implemented a stochastic modeling approach underpinned by a rigorous semantic formalism that made possible a set of powerful static analyses of the modeled systems.

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Java-Based Platform For Immuno-Engineering Biotherapeutics

A joint bioinformatics and laboratory-based program for predicting and re-engineering immunogenic regions in biologics that would eventually become a part of the standard workflow for all new biologic development programs throughout a global pharmaceutical company…

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Development Of An Agent-Based Toolkit For Modeling Complex Biological Systems

Software development of Swarm, a pioneering open-source agent-based modeling toolkit from the Santa Fe Institute, and consulting with scientists using this toolkit to model complex biological systems such as transcription factor networks…

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Cloud Computing Platform For Simulating Complex Cell-Signaling Networks

A commercial software-as-a-service (Saas) platform built on Amazon Web Services infrastructure, to allow biologists to collaboratively model and stimulate cell-signaling networks…

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Workflow engine for large-scale sequence data

An Amber principal was involved in the development of the open-source COSMOS Python library for managing large-scale sequencing workflows.

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